su: ignoring --preserve-environment, it's mutually exclusive with --login ========================================================================================= UCSCXenaShiny version 2.2.1 Project URL: https://github.com/openbiox/UCSCXenaShiny Usages: https://openbiox.github.io/UCSCXenaShiny/ If you use it in published research, please cite: Shensuo Li, Yuzhong Peng, Minjun Chen, Yankun Zhao, Yi Xiong, Jianfeng Li, Peng Luo, Haitao Wang, Fei Zhao, Qi Zhao, Yanru Cui, Sujun Chen, Jian-Guo Zhou, Shixiang Wang, Facilitating integrative and personalized oncology omics analysis with UCSCXenaShiny, Communications Biology, 1200 (2024), https://doi.org/10.1038/s42003-024-06891-2 ========================================================================================= --Enjoy it-- Checking datasets in zenodo path: 43 datasets found Run mode: server Checking dependencies... Loading required namespace: pacman Loading required namespace: gganatogram Installing package into ‘/usr/local/lib/R/extra-library’ (as ‘lib’ is unspecified) trying URL 'https://p3m.dev/cran/__linux__/noble/latest/src/contrib/data.table_1.18.4.tar.gz' Content type 'binary/octet-stream' length 2974880 bytes (2.8 MB) ================================================== downloaded 2.8 MB * installing *binary* package ‘data.table’ ... * package ‘data.table’ successfully unpacked and SHA256 sums checked * DONE (data.table) The downloaded source packages are in ‘/tmp/RtmpWhov1a/downloaded_packages’ data.table installed Warning in get(Info[i, 1], envir = env) : internal error 1 in R_decompress1 with libdeflate Installing package into ‘/usr/local/lib/R/extra-library’ (as ‘lib’ is unspecified) trying URL 'https://p3m.dev/cran/__linux__/noble/latest/src/contrib/plotly_4.12.1.tar.gz' Content type 'binary/octet-stream' length 4021792 bytes (3.8 MB) ================================================== downloaded 3.8 MB * installing *binary* package ‘plotly’ ... * package ‘plotly’ successfully unpacked and SHA256 sums checked * DONE (plotly) The downloaded source packages are in ‘/tmp/RtmpWhov1a/downloaded_packages’ plotly installed Warning in get(Info[i, 1], envir = env) : internal error 1 in R_decompress1 with libdeflate Warning in pacman::p_load(purrr, tidyr, stringr, magrittr, R.utils, data.table, : Failed to install/load: data.table, plotly Loading modules and UIs... Starting... Warning in get(Info[i, 1], envir = env) : internal error 1 in R_decompress1 with libdeflate Error in get(Info[i, 1], envir = env) : lazy-load database '/usr/local/lib/R/extra-library/data.table/R/data.table.rdb' is corrupt Calls: runApp ... asNamespace -> loadNamespace -> registerS3methods -> get Execution halted