su: ignoring --preserve-environment, it's mutually exclusive with --login ========================================================================================= UCSCXenaShiny version 2.2.0 Project URL: https://github.com/openbiox/UCSCXenaShiny Usages: https://openbiox.github.io/UCSCXenaShiny/ If you use it in published research, please cite: Shensuo Li, Yuzhong Peng, Minjun Chen, Yankun Zhao, Yi Xiong, Jianfeng Li, Peng Luo, Haitao Wang, Fei Zhao, Qi Zhao, Yanru Cui, Sujun Chen, Jian-Guo Zhou, Shixiang Wang, Facilitating integrative and personalized oncology omics analysis with UCSCXenaShiny, Communications Biology, 1200 (2024), https://doi.org/10.1038/s42003-024-06891-2 ========================================================================================= --Enjoy it-- Run mode: server Checking dependencies... Loading required namespace: pacman Loading required namespace: gganatogram Loading modules and UIs... Starting... Listening on http://127.0.0.1:43717 Shiny app run successfully! Enjoy it! -- Xena shiny team Download datasets from server mode. Try querying data #1 -> Checking if the dataset has probeMap... -> Done. ProbeMap is found. Saving data to file /xena/cache/4af116c5b84a8d51724d2fae0881f675.rds More info about dataset please run following commands: library(UCSCXenaTools) XenaGenerate(subset = XenaDatasets == "TcgaTargetGtex_rsem_gene_tpm") %>% XenaBrowse() Joining with `by = join_by(sample)` Warning: Error in mutate: ℹ In argument: `p = purrr::map(...)`. Caused by error in `purrr::map()`: ℹ In index: 26. ℹ With name: tissue.MESO. Caused by error in `tidyr::pivot_longer()`: ! `cols` must select at least one column. 190: 189: signalCondition 188: signal_abort 187: abort 186: 185: signalCondition 184: signal_abort 183: rlang::abort 182: cli::cli_abort 181: 180: signalCondition 179: signal_abort 178: rlang::abort 177: cli::cli_abort 176: build_longer_spec 175: pivot_longer.data.frame 174: tidyr::pivot_longer 173: dplyr::select 172: dplyr::filter 171: %>% 170: .f 169: call_with_cleanup 168: withCallingHandlers 167: with_indexed_errors 166: map_ 165: purrr::map 164: eval 163: mask$eval_all_mutate 162: mutate_col 161: withCallingHandlers 160: mutate_cols 159: mutate.data.frame 158: mutate 157: select 156: %>% 155: df_select 154: tidyr::unnest 153: unnest 152: %>% 151: compare_means 150: dplyr::arrange 149: %>% 148: 147: ..stacktraceon.. 146: .func 145: withVisible 144: withCallingHandlers 143: contextFunc 142: env$runWith 141: withCallingHandlers 140: domain$wrapSync 139: promises::with_promise_domain 138: captureStackTraces 137: force 136: with_otel_span_context 135: force 134: domain$wrapSync 133: promises::with_promise_domain 132: withReactiveDomain 131: domain$wrapSync 130: promises::with_promise_domain 129: ctx$run 128: self$.updateValue 127: ..stacktraceoff.. 126: stat_res 125: paste0 124: dots_list 123: a 122: dots_list 121: tags$li 120: dots_list 119: tags$ul 118: dots_list 117: tagList 116: renderUI 115: func 114: ..stacktraceon.. 113: force 112: withVisible 111: withCallingHandlers 110: domain$wrapSync 109: promises::with_promise_domain 108: captureStackTraces 107: doTryCatch 106: tryCatchOne 105: tryCatchList 104: tryCatch 103: do 102: hybrid_chain 101: renderFunc 100: ..stacktraceoff.. 99: output$homepage_daily_gene-gene_tip 98: ..stacktraceon.. 97: orig 96: func 95: withCallingHandlers 94: domain$wrapSync 93: promises::with_promise_domain 92: captureStackTraces 91: withCallingHandlers 90: shinyCallingHandlers 89: force 88: with_otel_span_reactive_update 87: withCallingHandlers 86: doTryCatch 85: tryCatchOne 84: tryCatchList 83: base::tryCatch 82: tryCatch 81: withVisible 80: hybrid_then 79: maybe_with_otel_span_reactive_update 78: force 77: domain$wrapSync 76: with_promise_domain 75: private$withCurrentOutput 74: force 73: withVisible 72: withCallingHandlers 71: domain$wrapSync 70: promises::with_promise_domain 69: captureStackTraces 68: doTryCatch 67: tryCatchOne 66: tryCatchList 65: tryCatch 64: do 63: hybrid_chain 62: force 61: withVisible 60: withCallingHandlers 59: domain$wrapSync 58: promises::with_promise_domain 57: captureStackTraces 56: doTryCatch 55: tryCatchOne 54: tryCatchList 53: tryCatch 52: do 51: hybrid_chain 50: observe 49: 48: contextFunc 47: env$runWith 46: withCallingHandlers 45: domain$wrapSync 44: promises::with_promise_domain 43: captureStackTraces 42: force 41: with_otel_span_context 40: force 39: domain$wrapSync 38: promises::with_promise_domain 37: withReactiveDomain 36: domain$wrapSync 35: promises::with_promise_domain 34: ctx$run 33: run 32: withCallingHandlers 31: domain$wrapSync 30: promises::with_promise_domain 29: captureStackTraces 28: withCallingHandlers 27: shinyCallingHandlers 26: force 25: withVisible 24: withCallingHandlers 23: domain$wrapSync 22: promises::with_promise_domain 21: captureStackTraces 20: doTryCatch 19: tryCatchOne 18: tryCatchList 17: tryCatch 16: do 15: hybrid_chain 14: flushCallback 13: FUN 12: lapply 11: ctx$executeFlushCallbacks 10: .getReactiveEnvironment()$flush 9: flushReact 8: serviceApp 7: ..stacktracefloor.. 6: withCallingHandlers 5: domain$wrapSync 4: promises::with_promise_domain 3: captureStackTraces 2: ..stacktraceoff.. 1: runApp Execution halted