su: ignoring --preserve-environment, it's mutually exclusive with --login ========================================================================================= UCSCXenaShiny version 2.2.0 Project URL: https://github.com/openbiox/UCSCXenaShiny Usages: https://openbiox.github.io/UCSCXenaShiny/ If you use it in published research, please cite: Shensuo Li, Yuzhong Peng, Minjun Chen, Yankun Zhao, Yi Xiong, Jianfeng Li, Peng Luo, Haitao Wang, Fei Zhao, Qi Zhao, Yanru Cui, Sujun Chen, Jian-Guo Zhou, Shixiang Wang, Facilitating integrative and personalized oncology omics analysis with UCSCXenaShiny, Communications Biology, 1200 (2024), https://doi.org/10.1038/s42003-024-06891-2 ========================================================================================= --Enjoy it-- Run mode: server Checking dependencies... Loading required namespace: pacman Loading required namespace: gganatogram Loading data from remote: https://zenodo.org/record/12819839/files/v2_tcga_id.rda, please wait... Warning in download.file(data_url, data_path) : URL https://zenodo.org/record/12819839/files/v2_tcga_id.rda: cannot open destfile '/home/shiny/apps/xena/datasets//v2_tcga_id.rda', reason 'No such file or directory' Warning in download.file(data_url, data_path) : download had nonzero exit status Data has been saved to /home/shiny/apps/xena/datasets//v2_tcga_id.rda Warning in readChar(con, 5L, useBytes = TRUE) : cannot open compressed file '/home/shiny/apps/xena/datasets//v2_tcga_id.rda', probable reason 'No such file or directory' Data load failed, probably due to broken download file, please try again. This time NULL will be returned. Loading data from remote: https://zenodo.org/record/12819839/files/v2_pcawg_id.rda, please wait... Warning in download.file(data_url, data_path) : URL https://zenodo.org/record/12819839/files/v2_pcawg_id.rda: cannot open destfile '/home/shiny/apps/xena/datasets//v2_pcawg_id.rda', reason 'No such file or directory' Warning in download.file(data_url, data_path) : download had nonzero exit status Data has been saved to /home/shiny/apps/xena/datasets//v2_pcawg_id.rda Warning in readChar(con, 5L, useBytes = TRUE) : cannot open compressed file '/home/shiny/apps/xena/datasets//v2_pcawg_id.rda', probable reason 'No such file or directory' Data load failed, probably due to broken download file, please try again. This time NULL will be returned. Loading data from remote: https://zenodo.org/record/12819839/files/v2_ccle_id.rda, please wait... Warning in download.file(data_url, data_path) : URL https://zenodo.org/record/12819839/files/v2_ccle_id.rda: cannot open destfile '/home/shiny/apps/xena/datasets//v2_ccle_id.rda', reason 'No such file or directory' Warning in download.file(data_url, data_path) : download had nonzero exit status Data has been saved to /home/shiny/apps/xena/datasets//v2_ccle_id.rda Warning in readChar(con, 5L, useBytes = TRUE) : cannot open compressed file '/home/shiny/apps/xena/datasets//v2_ccle_id.rda', probable reason 'No such file or directory' Data load failed, probably due to broken download file, please try again. This time NULL will be returned. Error in split.default(tcga_id$L3, tcga_id$L2) : first argument must be a vector Calls: runApp ... withVisible -> eval -> eval -> split -> split.default Execution halted