su: ignoring --preserve-environment, it's mutually exclusive with --login
Loading required namespace: usethis
Loading required namespace: devtools
Coco running mode: dev
Coco dev database: /databases/CircleRNADb
Warning in warn_if_app_dir_is_package(appDir) :
  Loading R/ subdirectory for Shiny application, but this directory appears to contain an R package. Sourcing files in R/ may cause unexpected behavior. See `?loadSupport` for more details.
ℹ Loading coco
Warning: replacing previous import ‘shinyWidgets::alert’ by ‘shinyjs::alert’ when loading ‘coco’
Warning: replacing previous import ‘shiny::runExample’ by ‘shinyjs::runExample’ when loading ‘coco’
You are using coco version 1.0.0
Cache path: ~/.coco_cache
Cache size: 20 GB

Listening on http://127.0.0.1:37227
Warning in dir.create(cache_dir, recursive = TRUE) :
  cannot create dir '/srv/shiny-server/TCCIA/app_cache', reason 'Permission denied'
Warning in value[[3L]](cond) :
  Error using cache directory at '/srv/shiny-server/TCCIA/app_cache/sass'. Using temp dir instead.
Warning in dir.create(cache_dir, recursive = TRUE) :
  cannot create dir '/srv/shiny-server/TCCIA/app_cache', reason 'Permission denied'
Warning in value[[3L]](cond) :
  Error using cache directory at '/srv/shiny-server/TCCIA/app_cache/sass'. Using temp dir instead.
Warning in dir.create(cache_dir, recursive = TRUE) :
  cannot create dir '/srv/shiny-server/TCCIA/app_cache', reason 'Permission denied'
Warning in value[[3L]](cond) :
  Error using cache directory at '/srv/shiny-server/TCCIA/app_cache/sass'. Using temp dir instead.
[2026-06-16 10:23:25 | INFO] Library path: /usr/local/lib/R/extra-library
Library path: /usr/local/lib/R/site-library
Library path: /usr/local/lib/R/library
[2026-06-16 10:23:25 | INFO] Cache path: ~/.coco_cache
Warning in renderWidget(instance) :
  Ignoring explicitly provided widget ID "repo-search-table"; Shiny doesn't use them
[2026-06-16 10:23:29 | INFO] the cohort(s) selected in repository: EGAD00001003977
[2026-06-16 10:23:52 | INFO] selected ids for filter: 1:A2M, 2:, 3:
[2026-06-16 10:23:55 | INFO] handling Y dataset with id EGAD00001003977_circRNA_Ensemble
[2026-06-16 10:23:55 | INFO] analysis with circRNA Host Gene selected
[2026-06-16 10:23:55 | INFO] handling X dataset with id EGAD00001003977_circRNA_Ensemble
[2026-06-16 10:23:55 | INFO] analysis with circRNA Host Gene selected
[2026-06-16 10:23:57 | INFO] handling dataset with id EGAD00001003977_circRNA_Ensemble
[2026-06-16 10:23:57 | INFO] analysis with circRNA Host Gene selected
[2026-06-16 10:23:57 | INFO] Querying row idx from dataset EGAD00001003977_circRNA_Ensemble
[2026-06-16 10:23:57 | INFO] 11838 ids found for the cohort(s) with head: A2M,A2ML1,AAAS,AACS,AADACL2-AS1,AADAT
Terminated