su: ignoring --preserve-environment, it's mutually exclusive with --login
Warning in warn_if_app_dir_is_package(appDir) :
  Loading R/ subdirectory for Shiny application, but this directory appears to contain an R package. Sourcing files in R/ may cause unexpected behavior. See `?loadSupport` for more details.
[ImmunoFusion] Installed package -> library(ImmunoFusion)
[2026-08-01 15:20:15] [INFO] Deploying ImmunoFusion on 0.0.0.0 : 40183

Listening on http://127.0.0.1:40183
[2026-08-01 15:20:21] [INFO] New user session started
[2026-08-01 15:20:21] [INFO] Module initialized: Home
[2026-08-01 15:20:21] [DEBUG] MODAL REOPEN: selected_cohort_groups = Hematologic, Bladder, Neuroblastoma, Breast, Brain, Colorectum, Endocrine, Esophageal, Head & Neck, Kidney, Liver, Lung, Ovary, Pancreas, Prostate, Sarcoma, Skin, Stomach, Testicle, Uterine, CellLine, Normal / Control, Others
Registered S3 method overwritten by 'bit64':
  method          from 
  print.bitstring tools
[2026-08-01 15:20:35] [INFO] Navigate to: Dist - Distribution
[2026-08-01 15:20:35] [INFO] Module initialized: Distribution
[2026-08-01 15:20:37] [INFO] Analysis: Distribution - Frequency
Warning in ggplot2::scale_y_continuous(trans = "log10", breaks = c(0, 1,  :
  log-10 transformation introduced infinite values.
Warning in ggplot2::scale_y_continuous(trans = "log10", breaks = c(0, 1,  :
  log-10 transformation introduced infinite values.
Warning in ggplot2::scale_y_continuous(trans = "log10", breaks = c(0, 1,  :
  log-10 transformation introduced infinite values.
Warning in ggplot2::scale_y_continuous(trans = "log10", breaks = c(0, 1,  :
  log-10 transformation introduced infinite values.
Warning in ggplot2::scale_y_continuous(trans = "log10", breaks = c(0, 1,  :
  log-10 transformation introduced infinite values.
[2026-08-01 15:21:17] [INFO] Navigate to: Comp - Comparison
[2026-08-01 15:21:17] [INFO] Module initialized: Comparison
[2026-08-01 15:21:20] [INFO] Analysis: Comparison - TME - cohort=EGAD00001003977, approach=CIBERSORT, feature=B_cells_memory
[2026-08-01 15:21:20] [DEBUG] [run_iobr] cohort=EGAD00001003977 tools= types= filtered=1954 unique_samples=250 mols=
[2026-08-01 15:21:24] [INFO] Navigate to: Cohort
[2026-08-01 15:21:24] [INFO] Module initialized: Cohort
[2026-08-01 15:21:35] [INFO] Navigate to: Cox - Cox Regression
[2026-08-01 15:21:35] [INFO] Module initialized: Cox Regression
[2026-08-01 15:21:41] [INFO] Analysis: Cox Regression - cohort=EGAD00001003977, genes=RAB3IP, endpoint=OS
[2026-08-01 15:21:46] [INFO] Analysis: Cox Regression - cohort=EGAD00001003977, genes=RAB3IP, endpoint=OS
exponentiate estimates of model(s) constructed from coxph method at default
[2026-08-01 15:21:51] [INFO] Navigate to: Land - Landscape
[2026-08-01 15:21:51] [INFO] Module initialized: Landscape
[2026-08-01 15:21:53] [INFO] Analysis: Landscape
All mutation types: CodingFusion, TruncatedCoding, SameGene,
TruncatedNoncoding, NoHeadGene.
[2026-08-01 15:22:01] [DEBUG] MODAL REOPEN: selected_cohort_groups = Hematologic, Bladder, Neuroblastoma, Breast, Brain, Colorectum, Endocrine, Esophageal, Head & Neck, Kidney, Liver, Lung, Ovary, Pancreas, Prostate, Sarcoma, Skin, Stomach, Testicle, Uterine, CellLine, Normal / Control, Others
[2026-08-01 15:22:08] [INFO] Navigate to: Data Summary
[2026-08-01 15:22:08] [INFO] Module initialized: Data Summary
[2026-08-01 15:22:08] [INFO] Navigate to: Home
[ImmunoFusion] Installed package -> library(ImmunoFusion)
[2026-08-01 15:25:32] [INFO] Deploying ImmunoFusion on 0.0.0.0 : 40183

Session terminated, killing shell... ...killed.